ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4m9dB1 - ECOD Domain | ECOD

ECOD/Domains/e4m9dB1

e4m9dB1

UID: 001095807

PDB

Range: B:-2-428
PDB: 4M9D chain B(all domains)
UniProt: Q81JI9 (all domains)
Gene: purA

Molecule: Adenylosuccinate synthetase

3D Structure

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Related Domains

Browse other domains in Adenylsucc_synt →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAdenylsucc_synt(2004.1.1.53)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131

+ 4 additives (Formic acid, Malonate Ion, Phosphate ion, …)

Formic acidFMT
DrugBank DB01942

Pfam Families

PF00709Adenylsucc_synt

Adenylosuccinate synthetase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4M9D RCSB PDB: 4M9D PDBe: 4M9D UniProt: Q81JI9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Malonate IonMLI

DrugBank DB02201

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.