ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kfdB3 - ECOD Domain | ECOD

ECOD/Domains/e4kfdB3

e4kfdB3

UID: 001096641

PDB

Range: B:101-221
PDB: 4KFD chain B(all domains)
UniProt: P12807 (all domains)
Gene: AMO

Molecule: Peroxisomal primary amine oxidase

3D Structure

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Related Domains

Browse other domains in Cu_amine_oxidN3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCystatin-like(243)

HH-groupAmine oxidase N-terminal region(243.5)

TT-groupAmine oxidase N-terminal region(243.5.1)

FFamilyCu_amine_oxidN3(243.5.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02728Cu_amine_oxidN3

Copper amine oxidase, N3 domain

ClanCL0047CuAO_N2_N3

External Links

ECOD PDB View: 4KFD RCSB PDB: 4KFD PDBe: 4KFD UniProt: P12807

Downloads

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