ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ly1A1 - ECOD Domain | ECOD

ECOD/Domains/e4ly1A1

e4ly1A1

UID: 001096985

PDB

Range: A:12-379
PDB: 4LY1 chain A(all domains)
UniProt: Q92769 (all domains)
Gene: HDAC2

Molecule: Histone deacetylase 2

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

4-(acetylamino)-N-[2-amino-5-(thiophen-2-yl)phenyl]benzamide20Y
Calcium ionCA
metal
Sodium ionNA
metal

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 4LY1 RCSB PDB: 4LY1 PDBe: 4LY1 UniProt: Q92769

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

+ 1 additive (Tetraethylene glycol)

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.