ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4bq5B1 - ECOD Domain | ECOD

ECOD/Domains/e4bq5B1

e4bq5B1

UID: 001098427

PDB

Range: B:44-243
PDB: 4BQ5 chain B(all domains)
UniProt: Q21HC5 (all domains)
Gene: aga50B

Molecule: B-AGARASE

3D Structure

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Related Domains

Browse other domains in Agarase_CBM →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyAgarase_CBM(10.32.1.167)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
3,6-anhydro-alpha-L-galactopyranoseAAL
within 5 Å only
beta-D-galactopyranoseGAL

Pfam Families

PF17992Agarase_CBM

Agarase CBM like domain

ClanCL0202GBD

External Links

ECOD PDB View: 4BQ5 RCSB PDB: 4BQ5 PDBe: 4BQ5 UniProt: Q21HC5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.