ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2derA3 - ECOD Domain | ECOD

ECOD/Domains/e2derA3

e2derA3

UID: 001099073

PDB

Range: A:283-368
PDB: 2DER chain A(all domains)
UniProt: P25745 (all domains)
Gene: mnmA

Molecule: tRNA-specific 2-thiouridylase mnmA

3D Structure

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Related Domains

Browse other domains in tRNA_Me_trans_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAminomethyltransferase beta-barrel domain(1.1.8)

FFamilytRNA_Me_trans_C(1.1.8.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF20258tRNA_Me_trans_C

Aminomethyltransferase beta-barrel domain

ClanCL0740GCV_T_C

External Links

ECOD PDB View: 2DER RCSB PDB: 2DER PDBe: 2DER UniProt: P25745

Downloads

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