ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2qwvA1 - ECOD Domain | ECOD

ECOD/Domains/e2qwvA1

e2qwvA1

UID: 000010992

RepresentativePDB

Range: A:5-205
PDB: 2QWV chain A(all domains)
UniProt: Q9KKP3 (all domains)
Gene: VC_A1059

Molecule: UPF0217 protein VC_A1059

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltrn_RNA_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_2(2488.1.1.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04013Methyltrn_RNA_2

Putative SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 2QWV RCSB PDB: 2QWV PDBe: 2QWV UniProt: Q9KKP3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure