ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ydhB1 - ECOD Domain | ECOD

ECOD/Domains/e1ydhB1

e1ydhB1

UID: 000110021

PDB

Range: B:8-186
PDB: 1YDH chain B(all domains)
UniProt: Q84MC2 (all domains)
Gene: LOG8

Molecule: At5g11950

3D Structure

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Related Domains

Browse other domains in Lysine_decarbox →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMCP/YpsA-related(7563)

HH-groupMCP/YpsA-related(7563.1)

TT-groupMCP/YpsA-related(7563.1.1)

FFamilyLysine_decarbox(7563.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03641Lysine_decarbox

Possible lysine decarboxylase

ClanCL0349SLOG

External Links

ECOD PDB View: 1YDH RCSB PDB: 1YDH PDBe: 1YDH UniProt: Q84MC2

Downloads

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