ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1lvoE2 - ECOD Domain | ECOD

ECOD/Domains/e1lvoE2

e1lvoE2

UID: 001102682

PDB

Range: E:186-299
PDB: 1LVO chain E(all domains)
UniProt: P0C6Y5 (all domains)
Gene: rep

Molecule: Replicase, hydrolase domain

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives (1,4-DIETHYLENE DIOXIDE, Sulfate ion)

1,4-DIETHYLENE DIOXIDEDIO
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 1LVO RCSB PDB: 1LVO PDBe: 1LVO UniProt: P0C6Y5

Downloads

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