ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1p9sA2 - ECOD Domain | ECOD

ECOD/Domains/e1p9sA2

e1p9sA2

UID: 001103640

PDB

Range: A:186-300
PDB: 1P9S chain A(all domains)
UniProt: P0C6U2 (all domains)
Gene: 1a

Molecule: Replicase polyprotein 1ab

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001)

HH-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1)

TT-groupCoronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain(6001.1.1)

FFamilyPeptidase_C30(6001.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,4-Dioxane)

1,4-DioxaneDIO
DrugBank DB03316

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 1P9S RCSB PDB: 1P9S PDBe: 1P9S UniProt: P0C6U2

Downloads

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