ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kyvD1 - ECOD Domain | ECOD

ECOD/Domains/e1kyvD1

e1kyvD1

UID: 000110666

PDB

Range: D:12-158
PDB: 1KYV chain D(all domains)
UniProt: Q9UUB1 (all domains)
Gene: rib4

Molecule: 6,7-Dimethyl-8-ribityllumazine Synthase

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

RiboflavinRBF
drugDrugBank DB00140

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 1KYV RCSB PDB: 1KYV PDBe: 1KYV UniProt: Q9UUB1

Downloads

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Drug annotations from DrugDomain.