ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4j20A1 - ECOD Domain | ECOD

ECOD/Domains/e4j20A1

e4j20A1

UID: 001106705

PDB

Range: A:1-88
PDB: 4J20 chain A(all domains)
UniProt: Q8KG93 (all domains)
Gene: CT0075

Molecule: Cytochrome c-555

3D Structure

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Related Domains

Browse other domains in Cytochrome_CBB3 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCytochrome c-like(107)

HH-groupCytochrome c(107.1)

TT-groupCytochrome c(107.1.1)

FFamilyCytochrome_CBB3(107.1.1.9)

Ligands

in contact, ≤ 4 Å

Hybrid Between B and C Type Hemes (Protoporphyrin Ixcontaining Fe)HEB
drugDrugBank DB02182
Sodium ionNA
metal

+ 2 additives (Isopropyl alcohol, Sulfate ion)

Isopropyl alcoholIPA

Pfam Families

PF13442Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 4J20 RCSB PDB: 4J20 PDBe: 4J20 UniProt: Q8KG93

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02325

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.