ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mk8B1 - ECOD Domain | ECOD

ECOD/Domains/e4mk8B1

e4mk8B1

UID: 001107309

PDB

Range: B:348-562
PDB: 4MK8 chain B(all domains)
UniProt: P26663 (all domains)

Molecule: RNA-DIRECTED RNA POLYMERASE

3D Structure

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Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_3(4967.1.1.5)

Ligands

in contact, ≤ 4 Å

N-(4-{2-[3-tert-butyl-2-methoxy-5-(2-oxo-1,2-dihydropyridin-3-yl)phenyl]ethyl}phenyl)methanesulfonamide28Q

+ 2 additives (Glycerin, Dimethyl sulfoxide)

GlycerinGOL
DrugBank DB09462
Dimethyl sulfoxide

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 4MK8 RCSB PDB: 4MK8 PDBe: 4MK8 UniProt: P26663

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.