ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mkaB2 - ECOD Domain | ECOD

ECOD/Domains/e4mkaB2

e4mkaB2

UID: 001107318

PDB

Range: B:1-347
PDB: 4MKA chain B(all domains)
UniProt: P26663 (all domains)

Molecule: RNA-DIRECTED RNA POLYMERASE

3D Structure

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Related Domains

Browse other domains in RdRP_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRdRP_3(304.48.1.15)

Ligands

in contact, ≤ 4 Å

N-{3-[3-tert-butyl-2-methoxy-5-(2-oxo-1,2-dihydropyridin-3-yl)phenyl]-1-oxo-1H-isochromen-7-yl}methanesulfonamide2AY

+ 2 additives (Dimethyl sulfoxide, Glycerin)

Dimethyl sulfoxideDMS
DrugBank DB01093
Glycerin

Pfam Families

Viral RNA dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 4MKA RCSB PDB: 4MKA PDBe: 4MKA UniProt: P26663

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.