ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4muqA1 - ECOD Domain | ECOD

ECOD/Domains/e4muqA1

e4muqA1

UID: 001107353

PDB

Range: A:0-250
PDB: 4MUQ chain A(all domains)
UniProt: Q9KHL8 (all domains)
Gene: vanYG2

Molecule: D,D-dipeptidase/D,D-carboxypeptidase

3D Structure

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Related Domains

Browse other domains in VanY →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHedgehog/DD-peptidase(307)

HH-groupHedgehog/DD-peptidase(307.1)

TT-groupHedgehog/DD-peptidase(307.1.1)

FFamilyVanY(307.1.1.3)

Ligands

in contact, ≤ 4 Å

(2R)-3-[(R)-[(1S)-1-aminoethyl](hydroxy)phosphoryl]-2-methylpropanoic acid2D8
(2R)-3-[(R)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]-2-methylpropanoic acidLY0
Zinc ionZN

Pfam Families

D-alanyl-D-alanine carboxypeptidase

ClanCL0170Peptidase_MD

External Links

ECOD PDB View: 4MUQ RCSB PDB: 4MUQ PDBe: 4MUQ UniProt: Q9KHL8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 3 additives (Glycerin, 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOLPE3

Shown in the structure viewer. Drug annotations from DrugDomain.