ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4c1qA1 - ECOD Domain | ECOD

ECOD/Domains/e4c1qA1

e4c1qA1

UID: 001107465

PDB

Range: A:195-367
PDB: 4C1Q chain A(all domains)
UniProt: Q96EQ9 (all domains)
Gene: Prdm9

Molecule: HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9

3D Structure

Loading viewer...

Related Domains

Browse other domains in PRDM2_PR →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilyPRDM2_PR(70.3.1.5)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21549PRDM2_PR

PR domain zinc finger protein 2, PR domain

ClanCL0489SAF

External Links

ECOD PDB View: 4C1Q RCSB PDB: 4C1Q PDBe: 4C1Q UniProt: Q96EQ9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure