ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4c1qB1 - ECOD Domain | ECOD

ECOD/Domains/e4c1qB1

e4c1qB1

UID: 001107466

PDB

Range: B:196-357
PDB: 4C1Q chain B(all domains)
UniProt: Q96EQ9 (all domains)
Gene: Prdm9

Molecule: HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9

3D Structure

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Related Domains

Browse other domains in PRDM2_PR →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilyPRDM2_PR(70.3.1.5)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752within 5 Å only
Zinc ionZN
metal

+ 1 additive (Glycerin)

Pfam Families

PF21549PRDM2_PR

PR domain zinc finger protein 2, PR domain

ClanCL0489SAF

External Links

ECOD PDB View: 4C1Q RCSB PDB: 4C1Q PDBe: 4C1Q UniProt: Q96EQ9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.