ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jwjB1 - ECOD Domain | ECOD

ECOD/Domains/e4jwjB1

e4jwjB1

UID: 001107640

PDB

Range: B:84-274
PDB: 4JWJ chain B(all domains)
UniProt: Q12400 (all domains)
Gene: TRM10

Molecule: tRNA (guanine(9)-N1)-methyltransferase

3D Structure

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Related Domains

Browse other domains in TRM10_TRM10A →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyTRM10_TRM10A(2488.1.1.19)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 2 additives (Sulfate ion, Tromethamine)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF27710TRM10_TRM10A

tRNA (guanine(9)-N(1))-methyltransferase TRM10/TRM10A

ClanCL0098SPOUT

External Links

ECOD PDB View: 4JWJ RCSB PDB: 4JWJ PDBe: 4JWJ UniProt: Q12400

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.