ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ljoB1 - ECOD Domain | ECOD

ECOD/Domains/e4ljoB1

e4ljoB1

UID: 001107752

PDB

Range: B:1-76
PDB: 4LJO chain B(all domains)
UniProt: P63048 (all domains)
Gene: UBA52

Molecule: Polyubiquitin-C

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 4LJO RCSB PDB: 4LJO PDBe: 4LJO UniProt: P63048

Downloads

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