ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4c2mB1 - ECOD Domain | ECOD

ECOD/Domains/e4c2mB1

e4c2mB1

UID: 001108092

RepresentativePDB

Range: B:8-209,B:401-547
PDB: 4C2M chain B(all domains)
UniProt: P22138 (all domains)
Gene: RPA135

Molecule: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010)

HH-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1)

TT-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1.1)

FFamilyRNA_pol_Rpb2_1(4010.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04563RNA_pol_Rpb2_1

RNA polymerase beta subunit

External Links

ECOD PDB View: 4C2M RCSB PDB: 4C2M PDBe: 4C2M UniProt: P22138

Downloads

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