ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ji6A3 - ECOD Domain | ECOD

ECOD/Domains/e2ji6A3

e2ji6A3

UID: 000111011

PDB

Range: A:370-552
PDB: 2JI6 chain A(all domains)
UniProt: P40149 (all domains)
Gene: oxc

Molecule: OXALYL-COA DECARBOXYLASE

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_C(7574.1.1.5)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-DiolB3P
drug

Pfam Families

PF02775TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 2JI6 RCSB PDB: 2JI6 PDBe: 2JI6 UniProt: P40149

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02676

Magnesium ionMG

metal

Oxalyl-coenzyme aOXK

2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATETPW

Shown in the structure viewer. Drug annotations from DrugDomain.