ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2g25A3 - ECOD Domain | ECOD

ECOD/Domains/e2g25A3

e2g25A3

UID: 000111052

PDB

Range: A:56-470
PDB: 2G25 chain A(all domains)
UniProt: P0AFG8 (all domains)
Gene: aceE

Molecule: Pyruvate dehydrogenase E1 component

3D Structure

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Related Domains

Browse other domains in Transketolase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTransketolase_N(7574.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1S)-1-HYDROXY-1-[(R)-HYDROXY(METHOXY)PHOSPHORYL]ETHYL}-5-(2-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUMTDK

+ 1 additive (Phosphate ion)

Pfam Families

PF00456Transketolase_N

Transketolase, thiamine diphosphate binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 2G25 RCSB PDB: 2G25 PDBe: 2G25 UniProt: P0AFG8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.