ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kooB1 - ECOD Domain | ECOD

ECOD/Domains/e4kooB1

e4kooB1

UID: 001111142

PDB

Range: B:78-239
PDB: 4KOO chain B(all domains)
UniProt: Q9M9S3 (all domains)
Gene: WHY1

Molecule: Single-stranded DNA-binding protein WHY1, chloroplastic

3D Structure

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Related Domains

Browse other domains in Whirly →

Classification

AArchitecturea+b two layers(a.11)

XX-groupssDNA-binding transcriptional regulator domain-like(295)

HH-groupssDNA-binding transcriptional regulator domain(295.1)

TT-groupssDNA-binding transcriptional regulator domain(295.1.1)

FFamilyWhirly(295.1.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Phosphate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Whirly transcription factor

ClanCL0609sPC4_like

External Links

ECOD PDB View: 4KOO RCSB PDB: 4KOO PDBe: 4KOO UniProt: Q9M9S3

Downloads

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Drug annotations from DrugDomain.