ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lhwB1 - ECOD Domain | ECOD

ECOD/Domains/e4lhwB1

e4lhwB1

UID: 001111506

PDB

Range: B:3-175
PDB: 4LHW chain B(all domains)
UniProt: P61006 (all domains)
Gene: RAB8A

Molecule: Ras-related protein Rab-8A

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082
Magnesium ionMG
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4LHW RCSB PDB: 4LHW PDBe: 4LHW UniProt: P61006

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.