ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2md8C1 - ECOD Domain | ECOD

ECOD/Domains/e2md8C1

e2md8C1

UID: 001112337

PDB

Range: C:1-56
PDB: 2MD8 chain C(all domains)
UniProt: Q13342 (all domains)
Gene: SP140

Molecule: Nuclear body protein SP140

3D Structure

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Related Domains

Browse other domains in PHD →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD(376.1.3.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PHD-finger

ClanCL0229RING

External Links

ECOD PDB View: 2MD8 RCSB PDB: 2MD8 PDBe: 2MD8 UniProt: Q13342

Downloads

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