ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mssB1 - ECOD Domain | ECOD

ECOD/Domains/e4mssB1

e4mssB1

UID: 001112554

PDB

Range: B:3-341
PDB: 4MSS chain B(all domains)
UniProt: B4EA43 (all domains)
Gene: nagZ1

Molecule: Beta-hexosaminidase 1

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_3 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_3(2002.1.1.39)

Ligands

in contact, ≤ 4 Å

N-[(3S,4R,5R,6S)-4,5,6-trihydroxyazepan-3-yl]acetamide2CZ

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00933Glyco_hydro_3

Glycosyl hydrolase family 3 N terminal domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4MSS RCSB PDB: 4MSS PDBe: 4MSS UniProt: B4EA43

Downloads

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