ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4murB1 - ECOD Domain | ECOD

ECOD/Domains/e4murB1

e4murB1

UID: 001112562

PDB

Range: B:1-189
PDB: 4MUR chain B(all domains)
UniProt: Q9JN36 (all domains)
Gene: vanXYC

Molecule: D,D-dipeptidase/D,D-carboxypeptidase

3D Structure

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Related Domains

Browse other domains in VanY →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHedgehog/DD-peptidase(307)

HH-groupHedgehog/DD-peptidase(307.1)

TT-groupHedgehog/DD-peptidase(307.1.1)

FFamilyVanY(307.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

D-alanyl-D-alanine carboxypeptidase

ClanCL0170Peptidase_MD

External Links

ECOD PDB View: 4MUR RCSB PDB: 4MUR PDBe: 4MUR UniProt: Q9JN36

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.