ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vjiA2 - ECOD Domain | ECOD

ECOD/Domains/e2vjiA2

e2vjiA2

UID: 001113012

PDB

Range: A:112-628
PDB: 2VJI chain A(all domains)
UniProt: Q9AYY6 (all domains)
Gene: 9

Molecule: TAILSPIKE PROTEIN

3D Structure

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Related Domains

Browse other domains in Phage_spike_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPhage_spike_2(207.2.1.27)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
2-(2-METHOXYETHOXY)ETHANOLPG0

+ 2 additives (Phosphate ion, 1,2-ETHANEDIOL)

Phosphate ionPO4

Pfam Families

PF18781Phage_spike_2

Phage spike trimer

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 2VJI RCSB PDB: 2VJI PDBe: 2VJI UniProt: Q9AYY6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.