ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ymwB1 - ECOD Domain | ECOD

ECOD/Domains/e2ymwB1

e2ymwB1

UID: 001113256

PDB

Range: B:2-248
PDB: 2YMW chain B(all domains)
UniProt: F2JXJ3 (all domains)
Gene: lodA

Molecule: L-LYSINE 6-OXIDASE

3D Structure

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Related Domains

Browse other domains in LodA_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyLodA_N(11.1.1.255)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Ethanol)

GlycerinGOL
DrugBank DB09462
EthanolEOH

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

L-Lysine epsilon oxidase N-terminal

ClanCL0159E-set

External Links

ECOD PDB View: 2YMW RCSB PDB: 2YMW PDBe: 2YMW UniProt: F2JXJ3

Downloads

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