ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ynbA1 - ECOD Domain | ECOD

ECOD/Domains/e2ynbA1

e2ynbA1

UID: 001113268

PDB

Range: A:1-189
PDB: 2YNB chain A(all domains)
UniProt: P0C6T4 (all domains)
Gene: 1a

Molecule: 3C-LIKE PROTEINASE

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamideG85
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 2YNB RCSB PDB: 2YNB PDBe: 2YNB UniProt: P0C6T4

Downloads

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