ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1cxqA1 - ECOD Domain | ECOD

ECOD/Domains/e1cxqA1

e1cxqA1

UID: 000011135

RepresentativePDB

Range: A:52-198
PDB: 1CXQ chain A(all domains)
UniProt: O92956 (all domains)
Gene: gag-pol

Molecule: AVIAN SARCOMA VIRUS INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (HEPES, Glycerin)

HEPESEPE
DrugBank DB16872
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 1CXQ RCSB PDB: 1CXQ PDBe: 1CXQ UniProt: O92956

Downloads

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