ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4f2mF1 - ECOD Domain | ECOD

ECOD/Domains/e4f2mF1

e4f2mF1

UID: 001114489

PDB

Range: F:507-650
PDB: 4F2M chain F(all domains)
UniProt: Q0PKZ5 (all domains)
Gene: S

Molecule: Spike protein

3D Structure

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Related Domains

Browse other domains in CoV_S1 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupAlpha-coronavirus spike protein receptor-binding domain(4169.1.2)

FFamilyCoV_S1(4169.1.2.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Coronavirus spike glycoprotein S1

External Links

ECOD PDB View: 4F2M RCSB PDB: 4F2M PDBe: 4F2M UniProt: Q0PKZ5

Downloads

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