ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4f86F1 - ECOD Domain | ECOD

ECOD/Domains/e4f86F1

e4f86F1

UID: 001114528

PDB

Range: F:27-300
PDB: 4F86 chain F(all domains)
UniProt: D3KYU3 (all domains)
Gene: gdpmt

Molecule: Geranyl diphosphate 2-C-methyltransferase

3D Structure

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Related Domains

Browse other domains in CMAS →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyCMAS(2003.1.5.21)

Ligands

in contact, ≤ 4 Å

Geranyl DiphosphateGPP
drugDrugBank DB02552
SinefunginSFG
drugDrugBank DB01910
Magnesium ion

Pfam Families

Mycolic acid cyclopropane synthetase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4F86 RCSB PDB: 4F86 PDBe: 4F86 UniProt: D3KYU3

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.