ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3s3oB1 - ECOD Domain | ECOD

ECOD/Domains/e3s3oB1

e3s3oB1

UID: 001116559

PDB

Range: B:116-299
PDB: 3S3O chain B(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: PFV integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Hexane-1,6-DiolHEZ
drugDrugBank DB02210

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3S3O RCSB PDB: 3S3O PDBe: 3S3O UniProt: P14350

Downloads

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Glycerol

Shown in the structure viewer. Drug annotations from DrugDomain.