ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2yptD1 - ECOD Domain | ECOD

ECOD/Domains/e2yptD1

e2yptD1

UID: 001117342

PDB

Range: D:10-285,D:322-471
PDB: 2YPT chain D(all domains)
UniProt: O75844 (all domains)
Gene: ZMPSTE24

Molecule: CAAX PRENYL PROTEASE 1 HOMOLOG

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M48,Peptidase_M48_N →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M48,Peptidase_M48_N(2498.1.1.11)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01435Peptidase_M48

Peptidase family M48

ClanCL0126Peptidase_MA

PF16491Peptidase_M48_N

CAAX prenyl protease N-terminal, five membrane helices

External Links

ECOD PDB View: 2YPT RCSB PDB: 2YPT PDBe: 2YPT UniProt: O75844

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure