ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vg0A4 - ECOD Domain | ECOD

ECOD/Domains/e1vg0A4

e1vg0A4

UID: 001117568

RepresentativePDB

Range: A:3-444,A:558-606
PDB: 1VG0 chain A(all domains)
UniProt: P37727 (all domains)
Gene: Chm

Molecule: Rab proteins geranylgeranyltransferase component A 1

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyGDI(2003.1.2.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
GERAN-8-YL GERANGER

+ 1 additive (Tetraethylene glycol)

Tetraethylene glycolPG4

Pfam Families

GDP dissociation inhibitor

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1VG0 RCSB PDB: 1VG0 PDBe: 1VG0 UniProt: P37727

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.