ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cebB1 - ECOD Domain | ECOD

ECOD/Domains/e4cebB1

e4cebB1

UID: 001118180

PDB

Range: B:57-209
PDB: 4CEB chain B(all domains)
UniProt: Q76353 (all domains)

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(R)-[(2S)-5-carboxy-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxin-6-yl]methyl-[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl]-prop-2-enyl-azaniumZSV

+ 4 additives (Acetic acid, Glycerin, Sulfate ion, …)

Acetic acidACY
DrugBank DB03166

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CEB RCSB PDB: 4CEB PDBe: 4CEB UniProt: Q76353

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.