ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cezB1 - ECOD Domain | ECOD

ECOD/Domains/e4cezB1

e4cezB1

UID: 001122527

PDB

Range: B:57-209
PDB: 4CEZ chain B(all domains)
UniProt: Q76353 (all domains)

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2S)-2-(2-carboxyethyl)-6-{[{2-[(cyclohexylmethyl)carbamoyl]benzyl}(prop-2-en-1-yl)amino]methyl}-2,3-dihydro-1,4-benzodioxine-5-carboxylic acidO3N

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CEZ RCSB PDB: 4CEZ PDBe: 4CEZ UniProt: Q76353

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.