ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ly6S2 - ECOD Domain | ECOD

ECOD/Domains/e4ly6S2

e4ly6S2

UID: 001123084

PDB

Range: S:138-307
PDB: 4LY6 chain S(all domains)
UniProt: O67198 (all domains)
Gene: ntrC1

Molecule: Transcriptional regulator (NtrC family)

3D Structure

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Related Domains

Browse other domains in Sigma54_activat →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySigma54_activat(2004.1.1.22)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833within 5 Å only
[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium08T

Pfam Families

PF00158Sigma54_activat

Sigma-54 interaction domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4LY6 RCSB PDB: 4LY6 PDBe: 4LY6 UniProt: O67198

Downloads

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Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.