ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4bpwC1 - ECOD Domain | ECOD

ECOD/Domains/e4bpwC1

e4bpwC1

UID: 001125715

PDB

Range: C:4-192,C:305-357,C:386-408
PDB: 4BPW chain C(all domains)
UniProt: P49642 (all domains)
Gene: PRIM1

Molecule: DNA PRIMASE SMALL SUBUNIT

3D Structure

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Related Domains

Browse other domains in DNA_primase_S →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPrim-pol domain(862)

HH-groupPrim-pol domain(862.1)

TT-groupPrim-pol domain(862.1.1)

FFamilyDNA_primase_S(862.1.1.1)

Ligands

in contact, ≤ 4 Å

Uridine 5'-triphosphateUTP
drugDrugBank DB04005
Magnesium ionMG
metal
Zinc ion

Pfam Families

PF01896DNA_primase_S

DNA primase small subunit

ClanCL0243AEP

External Links

ECOD PDB View: 4BPW RCSB PDB: 4BPW PDBe: 4BPW UniProt: P49642

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.