ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1npdA2 - ECOD Domain | ECOD

ECOD/Domains/e1npdA2

e1npdA2

UID: 000113441

PDB

Range: A:5-106
PDB: 1NPD chain A(all domains)
UniProt: P0A6D5 (all domains)
Gene: ydiB

Molecule: HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB

3D Structure

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Related Domains

Browse other domains in Shikimate_dh_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupAminoacid dehydrogenase-like, N-terminal domain(2007.1.6)

FFamilyShikimate_dh_N(2007.1.6.4)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08501Shikimate_dh_N

Shikimate dehydrogenase substrate binding domain

ClanCL0603AA_dh_N

External Links

ECOD PDB View: 1NPD RCSB PDB: 1NPD PDBe: 1NPD UniProt: P0A6D5

Downloads

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