ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vi2B2 - ECOD Domain | ECOD

ECOD/Domains/e1vi2B2

e1vi2B2

UID: 000113444

PDB

Range: B:6-106
PDB: 1VI2 chain B(all domains)
UniProt: P0A6D5 (all domains)
Gene: ydiB

Molecule: Shikimate 5-dehydrogenase 2

3D Structure

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Related Domains

Browse other domains in Shikimate_dh_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupAminoacid dehydrogenase-like, N-terminal domain(2007.1.6)

FFamilyShikimate_dh_N(2007.1.6.4)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128within 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF08501Shikimate_dh_N

Shikimate dehydrogenase substrate binding domain

ClanCL0603AA_dh_N

External Links

ECOD PDB View: 1VI2 RCSB PDB: 1VI2 PDBe: 1VI2 UniProt: P0A6D5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.