ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1npyB2 - ECOD Domain | ECOD

ECOD/Domains/e1npyB2

e1npyB2

UID: 000113446

PDB

Range: B:1-102
PDB: 1NPY chain B(all domains)
UniProt: P44774 (all domains)
Gene: sdhL

Molecule: Hypothetical shikimate 5-dehydrogenase-like protein HI0607

3D Structure

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Related Domains

Browse other domains in Shikimate_dh_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupAminoacid dehydrogenase-like, N-terminal domain(2007.1.6)

FFamilyShikimate_dh_N(2007.1.6.4)

Ligands

in contact, ≤ 4 Å

Acetyl groupACE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08501Shikimate_dh_N

Shikimate dehydrogenase substrate binding domain

ClanCL0603AA_dh_N

External Links

ECOD PDB View: 1NPY RCSB PDB: 1NPY PDBe: 1NPY UniProt: P44774

Downloads

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