ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vthB5 - ECOD Domain | ECOD

ECOD/Domains/e3vthB5

e3vthB5

UID: 001139064

RepresentativePDB

Range: B:391-498
PDB: 3VTH chain B(all domains)
UniProt: Q8RDB0 (all domains)
Gene: HypF

Molecule: Hydrogenase maturation factor

3D Structure

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Related Domains

Browse other domains in HypF_C →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyHypF_C(2484.1.1.80)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-methylenediphosphateAP2
drugDrugBank DB03148
FE (III) IONFE
metal

+ 2 additives (Glycerin, Phosphate ion)

Pfam Families

HypF Kae1-like domain

ClanCL0108Actin_ATPase

External Links

ECOD PDB View: 3VTH RCSB PDB: 3VTH PDBe: 3VTH UniProt: Q8RDB0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.