ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cf1B1 - ECOD Domain | ECOD

ECOD/Domains/e4cf1B1

e4cf1B1

UID: 001139448

PDB

Range: B:57-210
PDB: 4CF1 chain B(all domains)
UniProt: Q76353 (all domains)

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2s)-6-[[(1r,2s)-2-(5-azanylpentanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acidIY7

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CF1 RCSB PDB: 4CF1 PDBe: 4CF1 UniProt: Q76353

Downloads

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Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.