ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4chnA1 - ECOD Domain | ECOD

ECOD/Domains/e4chnA1

e4chnA1

UID: 001139461

PDB

Range: A:57-209
PDB: 4CHN chain A(all domains)
UniProt: Q76353 (all domains)

Molecule: INTEGRASE

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

2-(1,3-benzodioxol-4-ylcarbonylamino)ethanoic acidONZ

+ 4 additives (Acetate, Glycerin, Sulfate ion, …)

AcetateACT
DrugBank DB14511
GlycerinGOL

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4CHN RCSB PDB: 4CHN PDBe: 4CHN UniProt: Q76353

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.