ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2qmmB1 - ECOD Domain | ECOD

ECOD/Domains/e2qmmB1

e2qmmB1

UID: 000113979

PDB

Range: B:95-288
PDB: 2QMM chain B(all domains)
UniProt: O29206 (all domains)
Gene: trmY

Molecule: UPF0217 protein AF_1056

3D Structure

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Related Domains

Browse other domains in Methyltrn_RNA_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_2(2488.1.1.8)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04013Methyltrn_RNA_2

Putative SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 2QMM RCSB PDB: 2QMM PDBe: 2QMM UniProt: O29206

Downloads

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