ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1y34E1 - ECOD Domain | ECOD

ECOD/Domains/e1y34E1

e1y34E1

UID: 000113996

PDB

Range: E:1-270
PDB: 1Y34 chain E(all domains)
UniProt: P00782 (all domains)
Gene: apr

Molecule: subtilisin BPN'

3D Structure

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Related Domains

Browse other domains in Peptidase_S8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupSubtilisin-like(2499)

HH-groupSubtilisin-like(2499.1)

TT-groupSubtilisin-like(2499.1.1)

FFamilyPeptidase_S8(2499.1.1.1)

Ligands

in contact, ≤ 4 Å

POLYETHYLENE GLYCOL (N=34)15P
Calcium ionCA
metal
Sodium ionNA
metal

Pfam Families

PF00082Peptidase_S8

Subtilase family

External Links

ECOD PDB View: 1Y34 RCSB PDB: 1Y34 PDBe: 1Y34 UniProt: P00782

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.