ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zg9B1 - ECOD Domain | ECOD

ECOD/Domains/e3zg9B1

e3zg9B1

UID: 001140139

PDB

Range: B:391-494
PDB: 3ZG9 chain B(all domains)
UniProt: Q8Y547 (all domains)
Gene: lmo2229

Molecule: PENICILLIN-BINDING PROTEIN 4

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

(2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acidDXF

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3ZG9 RCSB PDB: 3ZG9 PDBe: 3ZG9 UniProt: Q8Y547

Downloads

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Drug annotations from DrugDomain.