ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4o11B1 - ECOD Domain | ECOD

ECOD/Domains/e4o11B1

e4o11B1

UID: 001140500

PDB

Range: B:7-226
PDB: 4O11 chain B(all domains)
UniProt: O26232 (all domains)
Gene: pyrF

Molecule: Orotidine 5'-phosphate decarboxylase

3D Structure

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Related Domains

Browse other domains in OMPdecase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOMPdecase(2002.1.1.9)

Ligands

in contact, ≤ 4 Å

6-hydroxyuridine-5'-phosphateBMP
drugDrugBank DB02890
Chloride ionCL
Magnesium ionMG

Pfam Families

PF00215OMPdecase

Orotidine 5'-phosphate decarboxylase / HUMPS family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4O11 RCSB PDB: 4O11 PDBe: 4O11 UniProt: O26232

Downloads

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metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.