ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4o8eA1 - ECOD Domain | ECOD

ECOD/Domains/e4o8eA1

e4o8eA1

UID: 001140690

PDB

Range: A:1-246
PDB: 4O8E chain A(all domains)
UniProt: D9J2T9 (all domains)
Gene: RIP

Molecule: rRNA N-glycosidase

3D Structure

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Related Domains

Browse other domains in RIP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRIP/Polo-box domain(292)

HH-groupRibosome inactivating proteins (RIP)(292.1)

TT-groupRibosome inactivating proteins (RIP)(292.1.1)

FFamilyRIP(292.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Uridine 5'-triphosphateUTP
drugDrugBank DB04005

+ 1 additive (Glycerin)

Pfam Families

Ribosome inactivating protein

External Links

ECOD PDB View: 4O8E RCSB PDB: 4O8E PDBe: 4O8E UniProt: D9J2T9

Downloads

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GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.